HPVomics

Predicted highly potential siRNAs (LR-HPVs)

S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV44	E8^E2	30	48	cagtactgtgcaagacgta	tacgtcttgcacagtactg	57.8	34
2	HPV44	E8^E2	29	47	gcagtactgtgcaagacgt	acgtcttgcacagtactgc	57.5	38
3	HPV44	E8^E2	32	50	gtactgtgcaagacgtatc	gatacgtcttgcacagtac	56.74	5
4	HPV44	E8^E2	15	33	gtggaagctgaaacgcagt	actgcgtttcagcttccac	56.16	26
5	HPV44	E8^E2	470	488	ttgatgaacagcaacgcca	tggcgttgctgttcatcaa	54.62	26
6	HPV44	E8^E2	194	212	acaacgccagaaacaccgt	acggtgtttctggcgttgt	54.56	9
7	HPV44	E8^E2	308	326	cagctacgcctgtagttca	tgaactacaggcgtagctg	54.48	48
8	HPV44	E8^E2	13	31	aagtggaagctgaaacgca	tgcgtttcagcttccactt	54.29	33
9	HPV44	E8^E2	31	49	agtactgtgcaagacgtat	atacgtcttgcacagtact	53.83	15
10	HPV44	E8^E2	393	411	gtttgtagcagcatcgtcc	ggacgatgctgctacaaac	53.75	23
11	HPV44	E8^E2	469	487	gttgatgaacagcaacgcc	ggcgttgctgttcatcaac	52.99	15
12	HPV44	E8^E2	34	52	actgtgcaagacgtatcca	tggatacgtcttgcacagt	52.9	12
13	HPV44	E8^E2	33	51	tactgtgcaagacgtatcc	ggatacgtcttgcacagta	52.66	11
14	HPV44	E8^E2	394	412	tttgtagcagcatcgtcca	tggacgatgctgctacaaa	52.36	13
15	HPV44	E8^E2	392	410	tgtttgtagcagcatcgtc	gacgatgctgctacaaaca	52.11	15
16	HPV44	E8^E2	187	205	aacaccaacaacgccagaa	ttctggcgttgttggtgtt	52.08	32
17	HPV44	E8^E2	471	489	tgatgaacagcaacgccag	ctggcgttgctgttcatca	51.84	26
18	HPV44	E8^E2	311	329	ctacgcctgtagttcaatt	aattgaactacaggcgtag	51.75	47
19	HPV44	E8^E2	18	36	gaagctgaaacgcagtact	agtactgcgtttcagcttc	51.69	42
20	HPV44	E8^E2	14	32	agtggaagctgaaacgcag	ctgcgtttcagcttccact	51.46	23
21	HPV44	E8^E2	396	414	tgtagcagcatcgtccaca	tgtggacgatgctgctaca	50.93	19
22	HPV44	E8^E2	395	413	ttgtagcagcatcgtccac	gtggacgatgctgctacaa	50.91	10
23	HPV44	E8^E2	186	204	aaacaccaacaacgccaga	tctggcgttgttggtgttt	50.72	34
24	HPV44	E8^E2	301	319	tattgtacagctacgcctg	caggcgtagctgtacaata	50.31	11
25	HPV44	E8^E2	424	442	acatgttcagatacatcca	tggatgtatctgaacatgt	50.11	47
26	HPV70	E8^E2	22	40	cagctgaagtggagtacca	tggtactccacttcagctg	59.94	39
27	HPV70	E8^E2	21	39	acagctgaagtggagtacc	ggtactccacttcagctgt	57	44
28	HPV70	E8^E2	452	470	gaattccacctagtgtaca	tgtacactaggtggaattc	55.9	48
29	HPV70	E8^E2	413	431	ctactgaagcacaacgcca	tggcgttgtgcttcagtag	55.22	26
30	HPV70	E8^E2	182	200	cagacggagtgttcgtgga	tccacgaacactccgtctg	54	40
31	HPV70	E8^E2	414	432	tactgaagcacaacgccaa	ttggcgttgtgcttcagta	53.89	26
32	HPV70	E8^E2	248	266	gtgacactacacctatagt	actataggtgtagtgtcac	53.42	46
33	HPV70	E8^E2	412	430	actactgaagcacaacgcc	ggcgttgtgcttcagtagt	51.85	14
34	HPV70	E8^E2	448	466	gttagaattccacctagtg	cactaggtggaattctaac	50.97	50
35	HPV70	E8^E2	181	199	acagacggagtgttcgtgg	ccacgaacactccgtctgt	50.73	30
36	HPV70	E8^E2	183	201	agacggagtgttcgtggac	gtccacgaacactccgtct	50.72	37
37	HPV70	E8^E2	415	433	actgaagcacaacgccaaa	tttggcgttgtgcttcagt	50.18	19
38	HPV70	E8^E2	410	428	atactactgaagcacaacg	cgttgtgcttcagtagtat	50.14	48
39	HPV72	E8^E2	491	509	atactgaccaacggacaca	tgtgtccgttggtcagtat	51.92	34
40	HPV72	E8^E2	553	571	gctggctatatgtcaatgt	acattgacatatagccagc	51.69	44
41	HPV72	E8^E2	72	90	tgttgaaactgttgggcga	tcgcccaacagtttcaaca	51.54	20
42	HPV72	E8^E2	487	505	gtggatactgaccaacgga	tccgttggtcagtatccac	50.82	9
43	HPV72	E8^E2	545	563	aagccactgctggctatat	atatagccagcagtggctt	50.22	34
44	HPV11	E8^E2	29	47	gcagcactgtacgagaagt	acttctcgtacagtgctgc	54.8	43
45	HPV11	E8^E2	51	69	cattgctgaacctactaca	tgtagtaggttcagcaatg	54.71	48
46	HPV11	E8^E2	50	68	ccattgctgaacctactac	gtagtaggttcagcaatgg	54.42	48
47	HPV11	E8^E2	272	290	gtgcagctacgcctatagt	actataggcgtagctgcac	54.31	46
48	HPV11	E8^E2	368	386	tagcatcttcaacgtggca	tgccacgttgaagatgcta	54.28	50
49	HPV11	E8^E2	270	288	cagtgcagctacgcctata	tataggcgtagctgcactg	54.06	17
50	HPV11	E8^E2	57	75	tgaacctactacatacacc	ggtgtatgtagtaggttca	53.6	46
51	HPV11	E8^E2	185	203	tggccaacatcagatccgt	acggatctgatgttggcca	51.98	33
52	HPV11	E8^E2	269	287	acagtgcagctacgcctat	ataggcgtagctgcactgt	51.95	19
53	HPV11	E8^E2	271	289	agtgcagctacgcctatag	ctataggcgtagctgcact	51.82	38
54	HPV11	E8^E2	440	458	gcagtgaggaacaacgtca	tgacgttgttcctcactgc	51.8	21
55	HPV11	E8^E2	443	461	gtgaggaacaacgtcagca	tgctgacgttgttcctcac	51.51	30
56	HPV11	E8^E2	13	31	aagtggaagctgcaacgca	tgcgttgcagcttccactt	51.41	15
57	HPV11	E8^E2	58	76	gaacctactacatacaccc	gggtgtatgtagtaggttc	50.62	43
58	HPV11	E8^E2	484	502	ccacccaccattaggcata	tatgcctaatggtgggtgg	50.62	36
59	HPV11	E8^E2	367	385	ttagcatcttcaacgtggc	gccacgttgaagatgctaa	50.46	46
60	HPV11	E8^E2	34	52	actgtacgagaagtatcca	tggatacttctcgtacagt	50.18	47
61	HPV42	E8^E2	160	178	ggaacagcatacaacgtgc	gcacgttgtatgctgttcc	56.03	25
62	HPV42	E8^E2	114	132	gcacaccacaacgtccatt	aatggacgttgtggtgtgc	55.53	7
63	HPV42	E8^E2	111	129	attgcacaccacaacgtcc	ggacgttgtggtgtgcaat	54.68	21
64	HPV42	E8^E2	131	149	ttgacaaccaccacgcaga	tctgcgtggtggttgtcaa	54.21	26
65	HPV42	E8^E2	109	127	ccattgcacaccacaacgt	acgttgtggtgtgcaatgg	53.91	12
66	HPV42	E8^E2	155	173	cagacggaacagcatacaa	ttgtatgctgttccgtctg	53.35	42
67	HPV42	E8^E2	163	181	acagcatacaacgtgccca	tgggcacgttgtatgctgt	53.1	41
68	HPV42	E8^E2	110	128	cattgcacaccacaacgtc	gacgttgtggtgtgcaatg	52.52	15
69	HPV42	E8^E2	112	130	ttgcacaccacaacgtcca	tggacgttgtggtgtgcaa	52.47	25
70	HPV42	E8^E2	113	131	tgcacaccacaacgtccat	atggacgttgtggtgtgca	51.9	35
71	HPV42	E8^E2	348	366	ctgtggaagtcaggctacg	cgtagcctgacttccacag	51.83	45
72	HPV42	E8^E2	349	367	tgtggaagtcaggctacgc	gcgtagcctgacttccaca	51.57	21
73	HPV42	E8^E2	161	179	gaacagcatacaacgtgcc	ggcacgttgtatgctgttc	51.27	31
74	HPV42	E8^E2	216	234	gtgtggacagtcgccatca	tgatggcgactgtccacac	51.17	28
75	HPV42	E8^E2	40	58	acatccaccgacgcagaga	tctctgcgtcggtggatgt	50.99	40
76	HPV42	E8^E2	350	368	gtggaagtcaggctacgcc	ggcgtagcctgacttccac	50.86	8
77	HPV42	E8^E2	154	172	acagacggaacagcataca	tgtatgctgttccgtctgt	50.75	40
78	HPV42	E8^E2	180	198	catccaaacctcaccgcca	tggcggtgaggtttggatg	50.11	47
79	HPV42	E8^E2	424	442	actgaatccagaaccgaga	tctcggttctggattcagt	52.38	30
80	HPV42	E8^E2	473	491	gtgtacagcaacggtctga	tcagaccgttgctgtacac	51.97	26
81	HPV42	E8^E2	330	348	agaaggtgaagccaattgc	gcaattggcttcaccttct	51.84	40
82	HPV42	E8^E2	241	259	actgcagacagaacacgca	tgcgtgttctgtctgcagt	50.42	19
83	HPV42	E8^E2	526	544	aaacatagcttgggtatgt	acatacccaagctatgttt	50.1	30
84	HPV42	E8^E2	527	545	aacatagcttgggtatgtt	aacatacccaagctatgtt	50.1	41
85	HPV43	E8^E2	290	308	gaagtcacactacgcctat	ataggcgtagtgtgacttc	56.13	19
86	HPV43	E8^E2	289	307	ggaagtcacactacgccta	taggcgtagtgtgacttcc	55.68	11
87	HPV43	E8^E2	247	265	gtgcctaagcatacggacc	ggtccgtatgcttaggcac	55.32	7
88	HPV43	E8^E2	291	309	aagtcacactacgcctata	tataggcgtagtgtgactt	54.06	17
89	HPV43	E8^E2	249	267	gcctaagcatacggaccac	gtggtccgtatgcttaggc	52.34	25
90	HPV43	E8^E2	248	266	tgcctaagcatacggacca	tggtccgtatgcttaggca	52.28	13
91	HPV43	E8^E2	292	310	agtcacactacgcctataa	ttataggcgtagtgtgact	51.8	38
92	HPV43	E8^E2	46	64	gaagtatcctctgttgcgt	acgcaacagaggatacttc	50.86	14
93	HPV43	E8^E2	268	286	caccctagagggcacaacc	ggttgtgccctctagggtg	50.83	48
94	HPV43	E8^E2	287	305	gtggaagtcacactacgcc	ggcgtagtgtgacttccac	50.6	9
95	HPV43	E8^E2	288	306	tggaagtcacactacgcct	aggcgtagtgtgacttcca	50.58	22
96	HPV43	E8^E2	388	406	gtgtcatccacatggcgat	atcgccatgtggatgacac	50.58	22
97	HPV43	E8^E2	97	115	gtcccagattccacgtgca	tgcacgtggaatctgggac	50.31	34
98	HPV43	E8^E2	243	261	actcgtgcctaagcatacg	cgtatgcttaggcacgagt	50.12	40
99	HPV81	E8^E2	318	336	acctgtaatacatttgcga	tcgcaaatgtattacaggt	53.51	28
100	HPV81	E8^E2	311	329	acactgcacctgtaataca	tgtattacaggtgcagtgt	52.59	44
101	HPV81	E8^E2	17	35	ggatattggaacatccgaa	ttcggatgttccaatatcc	52.18	10
102	HPV81	E8^E2	20	38	tattggaacatccgaagga	tccttcggatgttccaata	51.78	25
103	HPV81	E8^E2	430	448	tgtggagaggcaacgcaaa	tttgcgttgcctctccaca	51.74	26
104	HPV81	E8^E2	319	337	cctgtaatacatttgcgag	ctcgcaaatgtattacagg	50.63	14
105	HPV81	E8^E2	218	236	acactgcaccaccgaacat	atgttcggtggtgcagtgt	50.58	9
106	HPV81	E8^E2	279	297	cagcacagaaacacggaac	gttccgtgtttctgtgctg	50.36	24
107	HPV6	E8^E2	113	131	gcaccaaggaagacgcagt	actgcgtcttccttggtgc	55.63	36
108	HPV6	E8^E2	279	297	cagttcagctacgcctata	tataggcgtagctgaactg	53.16	17
109	HPV6	E8^E2	281	299	gttcagctacgcctatagt	actataggcgtagctgaac	52.96	46
110	HPV6	E8^E2	40	58	actacacaagaagtatcca	tggatacttcttgtgtagt	52.77	47
111	HPV6	E8^E2	14	32	agtggaagctggaacggga	tcccgttccagcttccact	52.16	27
112	HPV6	E8^E2	278	296	acagttcagctacgcctat	ataggcgtagctgaactgt	51.88	19
113	HPV6	E8^E2	277	295	aacagttcagctacgccta	taggcgtagctgaactgtt	51.52	11
114	HPV6	E8^E2	253	271	cagcaccaaagacggaaca	tgttccgtctttggtgctg	51.3	13
115	HPV6	E8^E2	238	256	actaacaatcacgaccagc	gctggtcgtgattgttagt	50.87	11
116	HPV6	E8^E2	280	298	agttcagctacgcctatag	ctataggcgtagctgaact	50.69	38
117	HPV6	E8^E2	275	293	gtaacagttcagctacgcc	ggcgtagctgaactgttac	50.67	8
118	HPV6	E8^E2	251	269	accagcaccaaagacggaa	ttccgtctttggtgctggt	50.62	47
119	HPV6	E8^E2	276	294	taacagttcagctacgcct	aggcgtagctgaactgtta	50.5	22
120	HPV6	E8^E2	252	270	ccagcaccaaagacggaac	gttccgtctttggtgctgg	50.17	17
121	HPV6	E8^E2	152	170	gagcacgaggagtccaaca	tgttggactcctcgtgctc	50.13	40
122	HPV54	E8^E2	384	402	gcattgggcatgtgtacca	tggtacacatgcccaatgc	59.31	50
123	HPV54	E8^E2	280	298	actacacctatagtgcact	agtgcactataggtgtagt	54.04	45
124	HPV54	E8^E2	478	496	gttcgcattccacctagta	tactaggtggaatgcgaac	53.92	50
125	HPV54	E8^E2	1	19	atggccatactgacgtgga	tccacgtcagtatggccat	53.71	47
126	HPV54	E8^E2	275	293	gtgacactacacctatagt	actataggtgtagtgtcac	53.42	46
127	HPV54	E8^E2	18	36	gaagctgcggtggagtacc	ggtactccaccgcagcttc	53.12	44
128	HPV54	E8^E2	3	21	ggccatactgacgtggaag	cttccacgtcagtatggcc	52.57	36
129	HPV54	E8^E2	391	409	gcatgtgtaccaggtacca	tggtacctggtacacatgc	52.24	35
130	HPV54	E8^E2	11	29	tgacgtggaagctgcggtg	caccgcagcttccacgtca	52.06	24
131	HPV54	E8^E2	223	241	aggcacatcagtgacgata	tatcgtcactgatgtgcct	50.5	14
132	HPV54	E8^E2	23	41	tgcggtggagtaccgaaga	tcttcggtactccaccgca	50.31	31
133	HPV61	E8^E2	547	565	gcaggctatatgtcaatgt	acattgacatatagcctgc	54.11	44
134	HPV61	E8^E2	258	276	tgaccagtggatcaacggt	accgttgatccactggtca	53.92	17
135	HPV61	E8^E2	539	557	aagccactgcaggctatat	atatagcctgcagtggctt	50.46	34